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Home » Virtualization » How to fix the Filesystem root is running low on Disk space

How to fix the Filesystem root is running low on Disk space

Posted on 25/01/202625/01/2026 Christian By Christian No Comments on How to fix the Filesystem root is running low on Disk space
Free up filesystem root space

The Filesystem Root represented by the symbol / is the master directory that holds everything on your virtual server (Ubuntu VM). This is similar to “C: drive” on a Windows machine. In this guide, we shall discuss the steps on how to fix the Filesystem root is running low on Disk space. Please, see Hacker Thinking in Ransomware Attacks: Backup Is the real Target, Bypassing BitLocker Loop by Unlocking or Disabling or PC Reset, and Veeam Host Components: Unable to reinstall Deploy Service SSH.

Every single file, including the Xen Orchestra source code, the database, the logs that fill up your disk earlier, and the operating system itself all live under this root directory.

Also, see the “latest Improvement to File Explorer on Windows 11, how to perform In-place upgrade of Windows Server 2022 to 2025, and Fix “Getting Windows Ready” Don’t turn off your computer stuck on Windows.

Why Low Disk Space on Filesystem root was prompted?

The system notification below explicitly states we have only 337.5MB of disk space remaining. This error occurred from the compiling Xen Orchestra (the xo-server and xo-web build process) which is very resource-heavy. This requires significantly more space than that to store dependencies, build artifacts, and temporary files.

File Systm root low

Please, see how to “Change your root password: Manage the root user on your macOS, Linux Error 13: Permission denied – Are you root, and how to reset MySQL Root password.

Temporary Fix

To fix this issues, some of your might want to delete (cleanup) the package cache from updates. This will also not work. Below is the command.

sudo apt-get clean

You might also want to remove old logs from your system has been running a long time. These logs can take up space. But as you know from this guide “A-Z of XCP-ng and Xen Orchestra setup and VM Creation“. This is a pretty new VM and as such, there are no logs that are stale capable of taking space on this system. A you can see, nothing was found and freed.

sudo journalctl --vacuum-time=3d

Now let’s verify if we truly have enough space. To check disk space, please run the command below. As you can see from the available colum, this is less than 1 GB. As such, it will fail when we try to run the Xen Orchestra setup.

df -h /
verify used space

Please, see “Connecting to the RDP host: Fix the Certificate could not be verified back to the root certificate“, and “how to Import certificates into Trusted Root and Personal certificate store“.

Increase File System Size on a VM running on XCP-ng

To fix this permanently, click on the VM to change the Disk size as shown below. We will have to change this from 10GB to 15.

Shutdown down VM and change the size from 10

Changed to 15 Gb. This way, we will have more than enough space to install XO.

Assign 15 to file system root

Note: The above steps are not sufficient to fix this issue as the VM does not correctly know about the disk changes. To demonstrate this, run the XO install again. As you can see below, it will fail again with the below

VM does not recognize it yet

Please, see how to Find saved Wi-Fi Passwords in Windows 10 and 11, how to Create a Bootable USB Drive Using dd Command on Linux, and how to use a Fido Certified U2F Key for Authentication.

Expand the Virtual Disk

Since this is a virtual disk (indicated by the xvda naming convention). As you can see above, we have already increased the disk size which is paramount for this next step. Therefore, run the command below to instruct the VM to use the new space by growing the partition.

sudo growpart /dev/xvda 2
grow patition

Next, run the command below to resize the filesystem

sudo resize2fs /dev/xvda2
Resize partition

As you can see below from the available disk space, we have 5.2G available. Therefore, we can install XO without issues.

available space

Upon running the command below to install Xen Orchestra (XO) using Ronivay’s script with the command below. Then, select 1 as shown in the image below.

sudo ./xo-install.sh
xo install

As you can see below, the installation is in progress and services are being started.

installing services

At this point, we have successfully installed XO to this VM.

installed and enabled xo-server services

Now, you should be able to access the XO web interface, add the XCP-ng server and start other tasks as you wish.

Login to XO
Xen Orchestra 6
XCP-ng connected

I hope you found this guide on how to fix the Filesystem root is running low on Disk space very useful. Please, feel free to leave a comment below.

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Virtualization Tags:Expand the Virtual Disk, Increase File System Size on a VM running on XCP-ng, Linux, Linux Disk Space, Linux distro, Ubuntu linux low on file system, Unable to install XO due to low system space

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